PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63530.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 215aa    MW: 23817.7 Da    PI: 9.7795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63530.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-0796145346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 
                      +W+  Ed+ lv +v+ lG++ W++I+  ++         R +k+ck+r + 
       EPS63530.1  96 PWSVFEDQALVVLVHDLGPN-WELISDAFNstlqfkcVFRNAKECKERHYV 145
                      799***************77.****************99*******99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-493149IPR001005SANT/Myb domain
PROSITE profilePS500906.74896147IPR017877Myb-like domain
SuperFamilySSF466898.16E-796157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-896149IPR009057Homeodomain-like
CDDcd001673.87E-596142No hitNo description
PfamPF139211.6E-797153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0043981Biological Processhistone H4-K5 acetylation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
RDHFKRRSEN CLAESNGNSG LFGQPPLKKP KVLRQSRDNP YDGHLHDGGS GPSPVTSQFS  60
NMHNQNKFVK MAGSRDRGRS IKGLKIPAGQ PGSGIPWSVF EDQALVVLVH DLGPNWELIS  120
DAFNSTLQFK CVFRNAKECK ERHYVLMDRT SADGADSTED SGSSQPYPST LPGIPKGSAR  180
QLFQRLQGPV DEDTLKSHFG TIIMIGQKLL HHRNQ
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000269|Ref.3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089090.21e-102LOW QUALITY PROTEIN: chromatin modification-related protein EAF1 B
SwissprotF4J7T38e-86EAF1A_ARATH; Chromatin modification-related protein EAF1 A
TrEMBLS8C9P61e-159S8C9P6_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_07s0005g06680.t011e-96(Vitis vinifera)
STRINGXP_009611360.13e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA192622
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]