PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63547.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 255aa    MW: 28533.2 Da    PI: 9.8577
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63547.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP152.13.4e-4721283136
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa..kskk 99 
                 +kkd+h ki+T++g+RdRRvRls+++a++fFdLq++LGfdk+skt++WLl+++k+aik+l+ +++s+a ++  +ss++s++     ++ + +   k kk
  EPS63547.1   2 TKKDKHRKIYTSQGPRDRRVRLSISIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKDLVMSKQSAAAAA--GSSKNSDA-----DEVSGSGskKWKK 93 
                 79*************************************************************88888333..33333333.....3333333114444 PP

         TCP 100 sqksaasalnlakesrakarararertrekmriknkl 136
                   k++  +l+lakesr karararertrekm+ik+kl
  EPS63547.1  94 VAKDS--HLDLAKESRVKARARARERTREKMCIKQKL 128
                 44555..5**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-351123IPR005333Transcription factor, TCP
PROSITE profilePS5136933.877361IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.151104121IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
TTKKDKHRKI YTSQGPRDRR VRLSISIARK FFDLQEMLGF DKPSKTLDWL LTKSKTAIKD  60
LVMSKQSAAA AAGSSKNSDA DEVSGSGSKK WKKVAKDSHL DLAKESRVKA RARARERTRE  120
KMCIKQKLYE MRNNCCSSSS CHGGGFEFPP PIQYMNNQME ICKISGGCSR SSQDEGGGFH  180
CLGDHYDEVN QTDLIHESIV IKRKVKSFGF QQNLIMNSNS GYASPAAGTT ENWDISSYTS  240
QSDIYAILDQ HKLSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-13961254Putative transcription factor PCF6
5zkt_B5e-13961254Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:10571179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551451.12e-62transcription factor DICHOTOMA-like
SwissprotQ9SNW82e-46DICH_ANTMA; Transcription factor DICHOTOMA
TrEMBLS8DUG90.0S8DUG9_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.K00858.1.p4e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-25TCP family protein
Publications ? help Back to Top
  1. Luo D, et al.
    Control of organ asymmetry in flowers of Antirrhinum.
    Cell, 1999. 99(4): p. 367-76
    [PMID:10571179]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]