PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63650.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 231aa    MW: 26595.6 Da    PI: 6.7897
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63650.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33100157259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+vk+s+fprsYY+Ct+++C+vkk+vers +dp++v++tYeg+H+h+
  EPS63650.1 100 EDGYRWRKYGQKSVKNSPFPRSYYKCTTTSCNVKKRVERSCNDPTIVVTTYEGQHTHP 157
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3484159IPR003657WRKY domain
SuperFamilySSF1182901.7E-2991159IPR003657WRKY domain
PROSITE profilePS5081131.76694159IPR003657WRKY domain
SMARTSM007749.1E-3899158IPR003657WRKY domain
PfamPF031063.1E-26100157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEDPLTLYDL YLQTDLDDRS LGFIDLLNDA WFTEDYDSRP AASPESAAGG PPRSCDESEE  60
SGQKDKLKTD KQMKPKKSIK KREREPRFAF MTKTEIDQLE DGYRWRKYGQ KSVKNSPFPR  120
SYYKCTTTSC NVKKRVERSC NDPTIVVTTY EGQHTHPVPP TVSSLVQAYS HPHTVRSELL  180
RISSRNLLDG AVFKHDHRHR EICFDTNSID LLRDGELGED LGRGHEHRTS E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2889159777Probable WRKY transcription factor 4
2lex_A3e-2889159777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904268.12e-52probable WRKY transcription factor 23
TrEMBLS8CA111e-172S8CA11_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_18.827e-52(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-46WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]