PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63665.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 245aa    MW: 28204.2 Da    PI: 8.4607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63665.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52111363127
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
                 pGfrFhPtdeelv++yL++k+++ ++  +++i++vd++k+ePwdLp k+k +e+ewyfFs rd+ky+tg r+nrat+ gyWk+tgkdke+++  + el+
  EPS63665.1  11 PGFRFHPTDEELVSYYLTNKMNHPNNFNASAIADVDLNKSEPWDLPGKAKMGENEWYFFSLRDRKYPTGVRTNRATRIGYWKTTGKDKEIYRCkTWELI 109
                 9********************9999666588***************99999****************************************9646678* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyr 127
                 g+kktLvfy+grapkg kt+Wvmheyr
  EPS63665.1 110 GMKKTLVFYTGRAPKGDKTNWVMHEYR 136
                 **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-598158IPR003441NAC domain
PROSITE profilePS5100557.1369158IPR003441NAC domain
PfamPF023653.3E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEIREEKQPS PGFRFHPTDE ELVSYYLTNK MNHPNNFNAS AIADVDLNKS EPWDLPGKAK  60
MGENEWYFFS LRDRKYPTGV RTNRATRIGY WKTTGKDKEI YRCKTWELIG MKKTLVFYTG  120
RAPKGDKTNW VMHEYRKLFD SALRLEQTEW VVCRVFQKSA GVRRIPVNTS VAPPENLCFL  180
VPARNFATEF QELGKIFRPH PAAPNDADSI IPTVGMDVIQ PPEPGQVFAG DSMGLEHCLH  240
GFWPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-481116419171NO APICAL MERISTEM PROTEIN
1ut4_B5e-481116419171NO APICAL MERISTEM PROTEIN
1ut7_A5e-481116419171NO APICAL MERISTEM PROTEIN
1ut7_B5e-481116419171NO APICAL MERISTEM PROTEIN
3swm_A6e-481116422174NAC domain-containing protein 19
3swm_B6e-481116422174NAC domain-containing protein 19
3swm_C6e-481116422174NAC domain-containing protein 19
3swm_D6e-481116422174NAC domain-containing protein 19
3swp_A6e-481116422174NAC domain-containing protein 19
3swp_B6e-481116422174NAC domain-containing protein 19
3swp_C6e-481116422174NAC domain-containing protein 19
3swp_D6e-481116422174NAC domain-containing protein 19
4dul_A5e-481116419171NAC domain-containing protein 19
4dul_B5e-481116419171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082111.14e-87NAC domain-containing protein 92
RefseqXP_020550032.14e-87NAC domain-containing protein 92
SwissprotQ9FLJ22e-71NC100_ARATH; NAC domain-containing protein 100
TrEMBLS8CA240.0S8CA24_9LAMI; Uncharacterized protein
STRINGXP_009622905.11e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-78NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]