PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63689.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 148aa MW: 16706.9 Da PI: 10.7727

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63689.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40	1e-12	105	144	1	40
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmre 40 rW++qe+l+L+e+r++++ +++++++k+plW+e+s+++ + EPS63689.1 105 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEISRFVIQ 144 8***********************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MRFTSLNRPH HHPKIRTPPP FSKKKGEKEE RRRNTIRFSR ARSEMDDDQY GISDLRHFIS 60 GRSLFPSPEI LADHRCVVSQ PAAVGGGGFD VVGVNSGGGD GGTGRWPRQE TLTLLEIRSR 120 LDPKFKEANQ KGPLWDEISR FVIQISLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022864074.1	2e-27	trihelix transcription factor PTL-like
TrEMBL	S8C9T0	1e-104	S8C9T0_9LAMI; Uncharacterized protein
STRING	XP_002528594.1	7e-25	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA19695	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-18	Trihelix family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]