PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63781.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bZIP

Protein Properties

Length: 357aa MW: 40852.2 Da PI: 7.9056

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63781.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.7	9.4e-12	70	106	2	38
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k++k++rr+++NReAAr+sR+RKka++++Le+ + L EPS63781.1 70 KPDKVQRRLAQNREAARKSRLRKKAYVQKLETCKQRL 106 789***************************9755555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-8	68	118	No hit	No description
SMART	SM00338	1.9E-6	69	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-8	70	104	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.531	71	115	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.57E-7	73	111	No hit	No description
PROSITE pattern	PS00036	0	76	91	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-26	160	234	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MNSGSTQFVP SRRMGLCDPI HQIAMWDDFK NSSYLDSPPQ IILEFDAKPE QQQSEENSHE 60 PNRYDRETTK PDKVQRRLAQ NREAARKSRL RKKAYVQKLE TCKQRLIQLE GELNQARKQG 120 FYIGDCSDNH HPTQLGTVNQ SVVIAFEKEY KKWVEVQNRH INDLRRALES DMGAMELSGL 180 ISKGMRHYSD LFTMKASVAR ADVFYLMSGL WSSSAERFFF WIGGFRPSEL LKLLGPHLEP 240 LSEQQRLEIS NLRQSCQQAE DALSQGMEKL HQIVADTISG SCLGEEGNCL QQINSAVGNL 300 ESLVRFVGQA DHLRHETLQQ ISRMLSPHQA AKGLLAFGDY FQRLQTLSSV WSTRPHQ

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MNSGSTQFVP SRRMGLCDPI HQIAMWDDFK NSSYLDSPPQ IILEFDAKPE QQQSEENSHE  60
PNRYDRETTK PDKVQRRLAQ NREAARKSRL RKKAYVQKLE TCKQRLIQLE GELNQARKQG  120
FYIGDCSDNH HPTQLGTVNQ SVVIAFEKEY KKWVEVQNRH INDLRRALES DMGAMELSGL  180
ISKGMRHYSD LFTMKASVAR ADVFYLMSGL WSSSAERFFF WIGGFRPSEL LKLLGPHLEP  240
LSEQQRLEIS NLRQSCQQAE DALSQGMEKL HQIVADTISG SCLGEEGNCL QQINSAVGNL  300
ESLVRFVGQA DHLRHETLQQ ISRMLSPHQA AKGLLAFGDY FQRLQTLSSV WSTRPHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097615.1	1e-162	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X2
Refseq	XP_011097616.1	1e-162	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Swissprot	Q39237	1e-137	TGA1_ARATH; Transcription factor TGA1
TrEMBL	S8CGQ7	0.0	S8CGQ7_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.L00088.1.p	1e-153	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-129	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]