PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63856.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 284aa    MW: 32357.2 Da    PI: 8.3355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63856.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.9e-51141392128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eelv +yL++kvegk++++ e i+++d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ e v
  EPS63856.1  14 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITSLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRVIRNESLESV 111
                 69***************************.89***************888889****************************************999*** PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy+g+ap+g++t+W+m+eyrl
  EPS63856.1 112 GLKKTLVFYSGKAPRGVRTSWIMNEYRL 139
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.18213157IPR003441NAC domain
SuperFamilySSF1019412.09E-5613156IPR003441NAC domain
PfamPF023651.7E-2515139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MELGGPRGED DVIMPGFRFH PTEEELVEFY LRRKVEGKRF NVELITSLDL YRYDPWELPA  60
MAAIGEKEWY FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RVIRNESLES VGLKKTLVFY  120
SGKAPRGVRT SWIMNEYRLP QNDTHKTETS LCRVYKRTGV ADSFPAKSSA KTPKPTAPYE  180
MFQQAHVSET SSSGSMNSSS RSIVNPLANS GDIISSSRGL DELQKVVYSV TRRREMEENA  240
AVSQFPAPDF QPFFTPGTTA PVDQSWDWNG GVMDTGRDYY GNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-561516119169NO APICAL MERISTEM PROTEIN
1ut4_B6e-561516119169NO APICAL MERISTEM PROTEIN
1ut7_A6e-561516119169NO APICAL MERISTEM PROTEIN
1ut7_B6e-561516119169NO APICAL MERISTEM PROTEIN
4dul_A6e-561516119169NAC domain-containing protein 19
4dul_B6e-561516119169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022897039.19e-98NAC domain-containing protein 35-like
SwissprotQ9ZVP86e-93NAC35_ARATH; NAC domain-containing protein 35
TrEMBLS8CH560.0S8CH56_9LAMI; Uncharacterized protein
STRINGEMT274503e-96(Aegilops tauschii)
STRINGTraes_3B_715E4224C.21e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.25e-94NAC domain containing protein 35
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]