PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63866.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 179aa MW: 19609.3 Da PI: 10.4743

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63866.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.2e-32	107	164	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYegeHnh+ EPS63866.1 107 DDFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERATDDPSMLIVTYEGEHNHS 164 99*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.1E-17	57	103	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.0E-34	93	165	IPR003657	WRKY domain
PROSITE profile	PS50811	30.871	100	166	IPR003657	WRKY domain
SuperFamily	SSF118290	1.15E-27	102	164	IPR003657	WRKY domain
SMART	SM00774	4.1E-38	105	165	IPR003657	WRKY domain
Pfam	PF03106	6.1E-28	107	163	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
ERKESTTTIN FASPATSFRS SLTADTESLQ PSMSSGFQIT NLSHSAGRPP ISKSIFKRKC 60 NSMDDAGGKC GGGGSSRCHC PKKRKTRLKR VVRVPAISMK MADIPPDDFS WRKYGQKPIK 120 GSPHPRGYYK CSSIRGCPAR KHVERATDDP SMLIVTYEGE HNHSALSKNE SPPLVLQSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	93	163	2	71	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	GGKCGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074403.1	1e-107	probable WRKY transcription factor 7
Swissprot	Q9STX0	2e-66	WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBL	S8CH62	1e-130	S8CH62_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N02732.1.p	4e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	4e-59	WRKY DNA-binding protein 7

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]