PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63910.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 106aa MW: 12458.9 Da PI: 5.8505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63910.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.5	2.5e-18	49	98	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f++Lre++P++ ++ +Ka+ L ++++YI+ Lq EPS63910.1 49 RSKHSETEQRRRSKINDRFQKLREIIPNS----EQRRDKASLLLEVIDYIQFLQ 98 899***********************8....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.511	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-18	47	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-21	47	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.10E-11	49	102	No hit	No description
Pfam	PF00010	9.7E-16	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-13	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
EEEEEEEEEE EMLCMKTEMS SSSSSQPRKV EAKMTTTTAG RQKIPSTSRS KHSETEQRRR 60 SKINDRFQKL REIIPNSEQR RDKASLLLEV IDYIQFLQHK VSKLEG

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546220.1	2e-28	PREDICTED: transcription factor BIM1 isoform X1
Refseq	XP_010546221.1	2e-28	PREDICTED: transcription factor BIM1 isoform X1
Refseq	XP_010546222.1	2e-28	PREDICTED: transcription factor BIM1 isoform X2
Refseq	XP_010546223.1	2e-28	PREDICTED: transcription factor BIM1 isoform X3
Refseq	XP_010546225.1	2e-28	PREDICTED: transcription factor BIM1 isoform X4
Swissprot	Q9LEZ3	1e-25	BIM1_ARATH; Transcription factor BIM1
TrEMBL	S8CAP2	8e-69	S8CAP2_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010546220.1	8e-28	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8947	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	3e-27	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]