PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63933.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family Trihelix
Protein Properties Length: 116aa    MW: 12837.2 Da    PI: 9.2183
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63933.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.25.1e-1940116160
    trihelix   1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkr 60 
                 +Wt+++v++Li ++ ++++++ +g+                 +kk++W++vsk+m+ergf +sp+qC++k+++lnkr
  EPS63933.1  40 KWTDNMVRLLIMVVYYVGDEVAEGSdrrkggggggggggsamQKKGKWKSVSKAMMERGFFVSPQQCEDKFNDLNKR 116
                 7*********************998888999999999**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-1538116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
PFGRTQTASI HSDDDDDNNN GGDEKRKQNS CSSPPWQRMK WTDNMVRLLI MVVYYVGDEV  60
AEGSDRRKGG GGGGGGGGSA MQKKGKWKSV SKAMMERGFF VSPQQCEDKF NDLNKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788508.13e-41PREDICTED: ESF1 homolog
TrEMBLS8DLT94e-80S8DLT9_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009788508.11e-40(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-27sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]