PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64148.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 171aa    MW: 20018.7 Da    PI: 9.2343
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64148.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1977131256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++t++q++ Lee+F+++ +++ ++++ LA+kl+L+ rqV vWFqNrRa+ k
  EPS64148.1  77 RKKLRLTRDQTTLLEECFRQQTTLNMAQKQTLAEKLKLKPRQVEVWFQNRRARTK 131
                 678899***********************************************98 PP
2HD-ZIP_I/II112.62.6e-3677165189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+++q +lLEe+F+++++L+  +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+++++l+een+rL++ev +Lr+
   EPS64148.1  77 RKKLRLTRDQTTLLEECFRQQTTLNMAQKQTLAEKLKLKPRQVEVWFQNRRARTKLKQTEVDCDFLKKKCERLQEENRRLKEEVLKLRS 165
                  69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-1855131IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1863134IPR009057Homeodomain-like
PROSITE profilePS5007116.50373133IPR001356Homeobox domain
SMARTSM003892.9E-1375137IPR001356Homeobox domain
PfamPF000467.3E-1777131IPR001356Homeobox domain
CDDcd000862.29E-1277134No hitNo description
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PfamPF021831.6E-8133165IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.0E-7133171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDDHDDDIRL GLGLGLGFAE YNPKIENPKT NKRLFLSFPL QESDDNLKVK AVEGENSSGI  60
GSKDQDDDRS FSNDFGRKKL RLTRDQTTLL EECFRQQTTL NMAQKQTLAE KLKLKPRQVE  120
VWFQNRRART KLKQTEVDCD FLKKKCERLQ EENRRLKEEV LKLRSTGKLE Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070186.16e-56homeobox-leucine zipper protein HOX17-like
SwissprotQ01I235e-37HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
SwissprotQ0JB925e-37HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLS8DMC71e-119S8DMC7_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0018s13300.16e-45(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1613945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.15e-38Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]