PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64161.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 112aa MW: 12145 Da PI: 7.7812

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64161.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.1	1.3e-28	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lrr+C +dC+l+p + ++q++++ +v k+FG+s ++++++a+p +r+++++sl++eA+ r+ +Pv Gavg++++++++l+q+++e EPS64161.1 2 SCNGCRILRRGCGEDCILRPSLewiesGDAQAHATLFVSKFFGRSDLMSFIAAVPLARRPALFRSLLFEACGRTVNPVDGAVGLLSSGNWHLCQAAVED 100 6*******************9987767889**************************************************************998 PP DUF260 95 allke 99 +l+++ EPS64161.1 101 VLAGK 105 87766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.475	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-25	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MSCNGCRILR RGCGEDCILR PSLEWIESGD AQAHATLFVS KFFGRSDLMS FIAAVPLARR 60 PALFRSLLFE ACGRTVNPVD GAVGLLSSGN WHLCQAAVED VLAGKSLRPD SY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028056214.1	5e-61	LOB domain-containing protein 39-like
Swissprot	Q9FN11	6e-57	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	S8CHS7	5e-76	S8CHS7_9LAMI; Uncharacterized protein (Fragment)
STRING	Aquca_042_00143.1	1e-56	(Aquilegia coerulea)
STRING	Gorai.010G025100.1	9e-57	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-59	LOB domain-containing protein 37

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]