PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64189.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 184aa    MW: 21384.2 Da    PI: 8.4015
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64189.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.9e-2169122457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 + ++t+eqle Le+ F+++ +++ e++++LA++lgL+ rq+ vWFqNrRa++k+
  EPS64189.1  69 KKRLTTEQLESLENSFQEEVKLDPERKTKLARELGLQPRQIAVWFQNRRARWKN 122
                 5579************************************************95 PP
2HD-ZIP_I/II121.44.5e-3968158292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rl++eq+++LE+sF+ee kL+perK++lareLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++y+a+ +e+++L++ev++Lr+ lk
   EPS64189.1  68 KKKRLTTEQLESLENSFQEEVKLDPERKTKLARELGLQPRQIAVWFQNRRARWKNKQLENLYDALKEEYNAVLREKQKLQQEVTALRALLK 158
                  9**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-2054125IPR009057Homeodomain-like
PROSITE profilePS5007117.6763123IPR001356Homeobox domain
SMARTSM003893.3E-1966127IPR001356Homeobox domain
PfamPF000463.7E-1868122IPR001356Homeobox domain
CDDcd000866.87E-1768124No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2270130IPR009057Homeodomain-like
PRINTSPR000314.6E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000314.6E-6103119IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDWNNEGFRV PGFVSRPESS FSFLYNYTYD QFPATEMKQV GSIPSGQQML PPLMGTKNCM  60
SMYGQDPKKK RLTTEQLESL ENSFQEEVKL DPERKTKLAR ELGLQPRQIA VWFQNRRARW  120
KNKQLENLYD ALKEEYNAVL REKQKLQQEV TALRALLKDH VTKKQISDIS GEETVESTSI  180
PSSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.12e-86putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-48ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8CB731e-134S8CB73_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J00491.1.p1e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-51homeobox 51
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]