PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64283.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 236aa MW: 26633.5 Da PI: 5.4178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64283.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	44	65	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+ F ++ n+krH r H EPS64283.1 44 KCEKCSLEFCSPINYKRHARIH 65 8*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.767	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
EPIIQLSGTR DNSVHLVPLL HSSLDQPDAP GWPVITPLKV QLLKCEKCSL EFCSPINYKR 60 HARIHRRSWK VDKEYGNLRT PLAEFWDKCS IEERKQVVSF DDIMLKKTPG SSVIDALDAA 120 LLEAGIWGFP YVYIKAGSKL LGVIRSSPSI SSRDLFGILD DASEGTFLFT GAAECVQNFI 180 FDGDAFNSLE WRNLIASTCF LFELQLVKAW VADKDAEALR CQKLLVEEEE AERNKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076143.1	2e-97	uncharacterized protein LOC105160463 isoform X1
Refseq	XP_020548920.1	2e-97	uncharacterized protein LOC105160463 isoform X1
Refseq	XP_020548921.1	6e-98	uncharacterized protein LOC105160463 isoform X2
TrEMBL	S8DMR3	1e-173	S8DMR3_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.F01102.1.p	9e-87	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-70	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]