PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64309.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRF
Protein Properties Length: 158aa    MW: 17804.2 Da    PI: 10.2096
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64309.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.71.3e-2577120144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  EPS64309.1  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120
                 79***************************************986 PP
2QLQ606.6e-211145236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+
  EPS64309.1 11 PFTASQWQELEHQALVYKYMISGIPIPPDLLFTIR 45
                9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-151145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8491146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94177121IPR014977WRC domain
PfamPF088798.9E-2278120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
GGGGGGRSRY PFTASQWQEL EHQALVYKYM ISGIPIPPDL LFTIRRSLDS STFLLPQPQQ  60
IGWSGFHMGM GFGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE  120
ILSPTPPTTD AIHFTNKTPP ASPPIYLTSS TPASEPNF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047491.11e-66PREDICTED: growth-regulating factor 1 isoform X1
RefseqXP_010047492.11e-66PREDICTED: growth-regulating factor 1 isoform X2
SwissprotQ8L8A67e-54GRF5_ARATH; Growth-regulating factor 5
TrEMBLS8CBJ01e-113S8CBJ0_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010047491.14e-66(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-56growth-regulating factor 5
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]