PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64380.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 170aa MW: 19216.8 Da PI: 9.7265

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64380.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	29	72	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR++i++++ Lr+l+P+ + K++ a++L A eYIk+L+ EPS64380.1 29 VTERNRRKKIKDRMLALRSLVPNiS------KMDRAATLGDAAEYIKELE 72 67*******************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.9E-16	14	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.434	22	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-15	24	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.30E-10	24	76	No hit	No description
Pfam	PF00010	1.8E-9	28	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-13	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MPSTSSSLST EGRNGSEEKG RTYKSKNLVT ERNRRKKIKD RMLALRSLVP NISKMDRAAT 60 LGDAAEYIKE LEEANRIYLQ HITTIEEEEE SRKNHHISVI PEIIIRQTQP EVRKGIFSQL 120 IQAVDSSGLK VVNANATTWN GSSLYAFRVE ATSVEVDLDM LRRSLISLIT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080803.1	3e-37	transcription factor bHLH90
TrEMBL	S8CBZ1	1e-120	S8CBZ1_9LAMI; Uncharacterized protein
STRING	Migut.D00743.1.p	8e-32	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9929	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	7e-20	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]