PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64429.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 79aa    MW: 9014.98 Da    PI: 8.3902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64429.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.7e-07423525
                --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                +Cr f + G C+ Gd+C+F+H
  EPS64429.1  4 PCREFVK-GKCRWGDSCRFSH 23
                7******.************* PP
2zf-CCCH23.78.7e-085273326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 +lC+ffa  G C++ d C+F+H+
  EPS64429.1 52 KPLCKFFAI-GKCSR-DDCRFSHD 73
                58***9998.*****.*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0054125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6424IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6441IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7424975IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-54973IPR000571Zinc finger, CCCH-type
SMARTSM003560.0165074IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-55273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
SNGPCREFVK GKCRWGDSCR FSHRLASEEK EPSRHSHSES EAQNQPPYKD AKPLCKFFAI  60
GKCSRDDCRF SHDDPRAAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547389.19e-20zinc finger CCCH domain-containing protein 55
RefseqXP_020547390.19e-20zinc finger CCCH domain-containing protein 55
RefseqXP_020547391.19e-20zinc finger CCCH domain-containing protein 55
TrEMBLS8CBV97e-51S8CBV9_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.N03235.1.p3e-18(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]