PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64468.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 84aa    MW: 9827.05 Da    PI: 9.4808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64468.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-106183527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                +C++f rtG C yGd+Ck+ H++
  EPS64468.1 61 ICNRFVRTGSCVYGDSCKYYHPQ 83
                7********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004515.1E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576677.31E-16447No hitNo description
PfamPF062204.3E-12538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.7235684IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-45883IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-75983IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-76183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-66182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPS ARRRHLEGVA HQRAKALWYD AARNSHWTNQ VPDPRSLGKG  60
ICNRFVRTGS CVYGDSCKYY HPQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012859022.12e-43PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP113e-30C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLS8DN913e-57S8DN91_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B00859.1.p1e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.17e-29C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]