PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64513.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 227aa    MW: 25903 Da    PI: 10.0264
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64513.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.21.9e-48141652133
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 
                 agkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LG+dk+sktieWL++++k+aikelt++             +++s+s++++ + +s  ++ss+
  EPS64513.1  14 AGKKDRHSKICTAQGIRDRRMRLSLQVARKFFDLQDMLGYDKASKTIEWLFTKSKKAIKELTRNqpqanhdnicnsgDTKSESFVSECEVVSGIEESSN 112
                 89**************************************************************77666666666553333333333333333333333 PP

         TCP  88 g.......kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                 +       +++ s+  +++k+++++  +   ++esr+kararar rtrekm+ik
  EPS64513.1 113 KetamiihSSNVSSSfNEEKNPENSG-VKPSSRESREKARARARCRTREKMMIK 165
                 35668986444444424444444443.566666******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-4615163IPR005333Transcription factor, TCP
PROSITE profilePS5136937.0821674IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.128144161IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
VRRRNLGVVP RRRAGKKDRH SKICTAQGIR DRRMRLSLQV ARKFFDLQDM LGYDKASKTI  60
EWLFTKSKKA IKELTRNQPQ ANHDNICNSG DTKSESFVSE CEVVSGIEES SNKETAMIIH  120
SSNVSSSFNE EKNPENSGVK PSSRESREKA RARARCRTRE KMMIKFSGHW PDGDQNHLQK  180
LGFSNTGGFE TPDQDPSFAR VSPYGIEYNS LDHHQQQQDC GTIEKLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-132174154Putative transcription factor PCF6
5zkt_B1e-132174154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552305.14e-66transcription factor TCP12-like
TrEMBLS8DNE31e-170S8DNE3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.E00294.1.p5e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.19e-31TCP domain protein 12
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]