PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64535.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 808aa    MW: 89393.6 Da    PI: 6.5091
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64535.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.4e-2376177199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++   W++++iyr++++r++lt+GW++Fv+ ++L +gD+v+F   ++++++l
  EPS64535.1  76 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDSLWTFRHIYRGQPKRHLLTTGWSHFVSGKRLIAGDSVLFI--RDEKQQL 170
                 99*****************************96555444..8************************************************..5688889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  EPS64535.1 171 LLGIRRA 177
                 ****997 PP
2Auxin_resp117.71e-38202285183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L+
  EPS64535.1 202 AAHAAANNSPFTVYYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMIFETEESGTRRYMGTITGISDSDPVRWKNSQWRNLQ 285
                 79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-4067191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-4367205IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-2075167No hitNo description
PROSITE profilePS5086312.13976178IPR003340B3 DNA binding domain
SMARTSM010191.0E-2176178IPR003340B3 DNA binding domain
PfamPF023625.0E-2176177IPR003340B3 DNA binding domain
PfamPF065073.8E-34202285IPR010525Auxin response factor
PfamPF023098.0E-7694780IPR033389AUX/IAA domain
PROSITE profilePS5174526.947695779IPR000270PB1 domain
SuperFamilySSF542771.67E-6699773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
QVAASMKKGM DMQVPSYPNL PPKLLCVLQS LILNADPETD EVYAQMTLQP VPSFDKDALL  60
RSDLSMRANK PQMEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFTMQ PPAQELVARD  120
LHDSLWTFRH IYRGQPKRHL LTTGWSHFVS GKRLIAGDSV LFIRDEKQQL LLGIRRANRQ  180
PTALSSSVLS SDSMHIGILA AAAHAAANNS PFTVYYNPRA SPSEFVIPLA KYYKAVCSNQ  240
ISLGMRFRMI FETEESGTRR YMGTITGISD SDPVRWKNSQ WRNLQARLIW WDESTAGEKR  300
SRVSIWEIDP VTAPFFICQT PSPLFRPKRP RLLPGMPDDD PCDLDIMFWS STMPWIGDEL  360
GSRKDPQSFP GLSLAQWMNM QQNSNCMSPL PGSSHRHNEL QNNGSRPNRQ QPAVQDHHQI  420
QKLVVPSSSL IETNQILRPC QQQICNQSLL SPSDILSQPQ LNIISDQLQL VDVIQPSFSN  480
PTADVSSIRI EQHQKLLSGQ VGRRSSLNHL ENNQLSAVTT EDVPSCSTSP SATNNAASLV  540
MLRDVKQPPF NASVTQSRGF YDPARGGGGR ADYLDSSPSA ATSVLSQNNS SSACFNPLSA  600
APPPRGDPRN HVVFGSDFES QLGMAMIPPG DHGNMMASFD ATAKETHPDF SSSVVTQSCG  660
APDMAFDSFD MAMNDDNDNF GNAGVSSWAG VPRMRTYTKV YKRGAVGRSI DVTRYSSYEG  720
LKHDLARRFG IEGQLEDGLR VGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV  780
QQMSLDGDDF GNGVVSKQAC SSSENNGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-141130983388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739623.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLS8CCB40.0S8CCB4_9LAMI; Auxin response factor (Fragment)
STRINGOPUNC06G24250.10.0(Oryza punctata)
STRINGLPERR06G22130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-169auxin response factor 19
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]