PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64590.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YC

Protein Properties

Length: 113aa MW: 13349.2 Da PI: 7.6065

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64590.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	30.1	1.1e-09	24	106	16	98
NF-YC 16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++P+ r+k i+k + +is ea l+ +a e f+ ++ ++ a +++ + ++++vt+ + f fl d vp+ EPS64590.1 24 SVLYRFPMNRVKSIIKEEIPDLRISPEAVFLINRASEKFLQLFSKEAYACAFLDRKNHISYHHLSSIVTKRKRFSFLSDFVPE 106 555689*********987788************999999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.5E-10	28	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-18	29	106	IPR009072	Histone-fold
SuperFamily	SSF47113	4.97E-14	46	107	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
KKIRVEDDND DEEGDEPEKK KRDSVLYRFP MNRVKSIIKE EIPDLRISPE AVFLINRASE 60 KFLQLFSKEA YACAFLDRKN HISYHHLSSI VTKRKRFSFL SDFVPEMLKA EDA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089889.1	1e-44	protein MNN4 isoform X1
TrEMBL	S8CCF6	3e-75	S8CCF6_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009800538.1	3e-34	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9304	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-24	nuclear factor Y, subunit C10

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]