PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64610.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 433aa MW: 48329.1 Da PI: 5.8812

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64610.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg+ F++ ++ +H ++ EPS64610.1 101 FECPVCGRGFTSEEEVSSHVDSC 123 89*****************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00734	0.0011	100	124	IPR006642	Zinc finger, Rad18-type putative
PROSITE profile	PS50157	10.201	101	130	IPR007087	Zinc finger, C2H2
CDD	cd09212	1.36E-20	146	232	No hit	No description
SuperFamily	SSF143503	1.44E-17	150	231	IPR018997	PUB domain
SMART	SM00580	2.1E-11	152	216	IPR018997	PUB domain
Pfam	PF09409	2.3E-16	153	223	IPR018997	PUB domain
SuperFamily	SSF54236	4.39E-12	302	409	IPR029071	Ubiquitin-related domain
SMART	SM00166	0.0014	323	411	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	6.0E-9	326	410	No hit	No description
Pfam	PF00789	4.3E-7	327	388	IPR001012	UBX domain
PROSITE profile	PS50033	11.456	327	409	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0050832	Biological Process	defense response to fungus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MDEMRDKMKD LMKKVNKPFS SSSSGKFKGQ GRVLGSSSSQ PQRISTPPQH KSEEEKKPET 60 RLPPPPAPTG NNPSSETGFD PFNSLITSGK RNPNGYSLQV FECPVCGRGF TSEEEVSSHV 120 DSCLGTSSEP ALNSDQLRGY VNAYLSGKPS DASLEVMIKL VRNILKDPSN PKFRKVRTGN 180 IKIKEAIIDV AGGVEFLEFI GFKVKEEDAE MWLVMEEEPT EKVLSSVTDA VSLLESHKVE 240 EEEEEQKVSH TSVAKLEDPI KPKQIDRQIR VFFSVPESVA AKIEVPDSFY NLGGDELKRE 300 AEMRRKKLED SKLLIPKSYR EKKQAKKRYR KTVIRVQFPD GVVLQAIFSP SETTDALYQF 360 VSSALKDPGL EFDLLHPVLV RRRVIPRAGE KPAVTLEDED LVPAALVKLK PIETDDVVFT 420 GLTNDLLLIS EPL

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MDEMRDKMKD LMKKVNKPFS SSSSGKFKGQ GRVLGSSSSQ PQRISTPPQH KSEEEKKPET  60
RLPPPPAPTG NNPSSETGFD PFNSLITSGK RNPNGYSLQV FECPVCGRGF TSEEEVSSHV  120
DSCLGTSSEP ALNSDQLRGY VNAYLSGKPS DASLEVMIKL VRNILKDPSN PKFRKVRTGN  180
IKIKEAIIDV AGGVEFLEFI GFKVKEEDAE MWLVMEEEPT EKVLSSVTDA VSLLESHKVE  240
EEEEEQKVSH TSVAKLEDPI KPKQIDRQIR VFFSVPESVA AKIEVPDSFY NLGGDELKRE  300
AEMRRKKLED SKLLIPKSYR EKKQAKKRYR KTVIRVQFPD GVVLQAIFSP SETTDALYQF  360
VSSALKDPGL EFDLLHPVLV RRRVIPRAGE KPAVTLEDED LVPAALVKLK PIETDDVVFT  420
GLTNDLLLIS EPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	6e-13	280	409	19	146	Tether containing UBX domain for GLUT4
5ifs_C	6e-13	280	409	19	146	Tether containing UBX domain for GLUT4
5ifw_A	4e-13	280	409	19	146	Tether containing UBX domain for GLUT4
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Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070586.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-154	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	S8CCH2	0.0	S8CCH2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.E00465.1.p	1e-175	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10112	6	6

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]