PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64783.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 140aa MW: 16240.5 Da PI: 10.5142

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64783.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	153.5	1.3e-47	1	125	4	135
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqk 102 kkdrhski+T++g+RdRRvRls+ +a++fFdLq++LG+dk+skt++WLl+++k aikel++ ++++ +s +s+++ g+++ +++++++s+k EPS64783.1 1 KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGVDKPSKTLDWLLTKSKSAIKELVQKKQKKG-------ESRPDSKEGGGEEEDEEEEEEESRK 92 8***********************************************************66666.......2222222333344555556666666 PP TCP 103 saasalnlakesrakarararertrekmriknk 135 ++ +++ +akesrakarararertrekm+ikn EPS64783.1 93 KKCTNNTIAKESRAKARARARERTREKMCIKNM 125 6666799999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	36.269	1	59	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.9E-36	1	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51370	12.483	102	119	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
KKDRHSKIYT SQGPRDRRVR LSIGIARKFF DLQEMLGVDK PSKTLDWLLT KSKSAIKELV 60 QKKQKKGESR PDSKEGGGEE EDEEEEEEES RKKKCTNNTI AKESRAKARA RARERTREKM 120 CIKNMNVASG INQLQFLQLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-14	6	59	1	54	Putative transcription factor PCF6
5zkt_B	7e-14	6	59	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269\|PubMed:16236768, ECO:0000269\|PubMed:8893002}.
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554786.1	4e-36	transcription factor CYCLOIDEA
Swissprot	O49250	1e-40	CYCLD_ANTMA; Transcription factor CYCLOIDEA
Swissprot	Q9SBV6	8e-41	CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBL	S8DP26	2e-96	S8DP26_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.K00858.1.p	7e-35	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-29	TCP family protein

Publications ? help Back to Top
Vieira CP,Vieira J,Charlesworth D Evolution of the cycloidea gene family in Antirrhinum and Misopates. Mol. Biol. Evol., 1999. 16(11): p. 1474-83 [PMID:10555278] Gubitz T,Caldwell A,Hudson A Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives. Mol. Biol. Evol., 2003. 20(9): p. 1537-44 [PMID:12832647] Reeves PA,Olmstead RG Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution. Mol. Biol. Evol., 2003. 20(12): p. 1997-2009 [PMID:12885953] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Luo D,Carpenter R,Vincent C,Copsey L,Coen E Origin of floral asymmetry in Antirrhinum. Nature, 1996. 383(6603): p. 794-9 [PMID:8893002]