PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64788.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB

Protein Properties

Length: 459aa MW: 51551.4 Da PI: 9.7965

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64788.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.5e-07	190	231	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT E e ++d + +G++ +++I++ + ++t +c+++++k EPS64788.1 190 TWTSSEREVFIDKLASFGKD-FRKISSFLD-HKTVADCVEFYYK 231 7***************99.*****.*********98 PP
2	Myb_DNA-binding	34.9	3.5e-11	411	451	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT +E +v+av ++G++ ++ I+r++ +R+ kqck ++ k EPS64788.1 411 WTDDEKSAFVRAVSMYGKD-FSMISRCVR-TRSKKQCKVFFSK 451 ***************99.*****.******88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.08E-13	174	235	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.086	186	237	IPR017884	SANT domain
SMART	SM00717	6.0E-7	187	235	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-7	406	451	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.684	406	457	IPR017884	SANT domain
SuperFamily	SSF46689	3.21E-11	406	457	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-8	407	455	IPR001005	SANT/Myb domain
CDD	cd00167	5.98E-8	411	449	No hit	No description
Pfam	PF00249	1.7E-8	411	450	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
TYESIISSNK VTWTVTLEEL SQLLPSGQRF FDLSTPSHGS SSTTDLTAVG KNFLRKRRAL 60 QFNERSLILK YKACKHFWKE GRVVSVRKLR GKSQKRFDQS QALHKKNRSC RSRLTHSGGT 120 DNPPLTVPAE ELVDFVNRLL SSSPFKPYRR ILRMPALIID RQTKESRFVS SNGLVEDPLA 180 LEKERYLINT WTSSEREVFI DKLASFGKDF RKISSFLDHK TVADCVEFYY KNHKSECFSR 240 AKRKSGSSEQ RKSQPSSTYL VTAGKRWSRE AGAVSLDILG EASAIAASND GYVESQPKYK 300 SRMFFPSSRY YDSPRGGGDD GRLLAPESID VYNGETAAVD VLAGICGSLS SEAMSSCITS 360 SIDPQDGGIL DLRLQRVNSC VKRPLTPPDV TQIVDKECSE ESCEAVNSAH WTDDEKSAFV 420 RAVSMYGKDF SMISRCVRTR SKKQCKVFFS KARKCLGLD

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

TYESIISSNK VTWTVTLEEL SQLLPSGQRF FDLSTPSHGS SSTTDLTAVG KNFLRKRRAL  60
QFNERSLILK YKACKHFWKE GRVVSVRKLR GKSQKRFDQS QALHKKNRSC RSRLTHSGGT  120
DNPPLTVPAE ELVDFVNRLL SSSPFKPYRR ILRMPALIID RQTKESRFVS SNGLVEDPLA  180
LEKERYLINT WTSSEREVFI DKLASFGKDF RKISSFLDHK TVADCVEFYY KNHKSECFSR  240
AKRKSGSSEQ RKSQPSSTYL VTAGKRWSRE AGAVSLDILG EASAIAASND GYVESQPKYK  300
SRMFFPSSRY YDSPRGGGDD GRLLAPESID VYNGETAAVD VLAGICGSLS SEAMSSCITS  360
SIDPQDGGIL DLRLQRVNSC VKRPLTPPDV TQIVDKECSE ESCEAVNSAH WTDDEKSAFV  420
RAVSMYGKDF SMISRCVRTR SKKQCKVFFS KARKCLGLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	6e-17	149	238	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	6e-17	149	238	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834923.1	1e-175	PREDICTED: uncharacterized protein LOC105955688
TrEMBL	S8DP32	0.0	S8DP32_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.F01767.1.p	1e-174	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	6e-85	MYB family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]