PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64790.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 166aa MW: 18733.2 Da PI: 7.4294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64790.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4.1e-13	11	56	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+ErrRR+riN +++Lr++lP +K +Ka+ L +Av+ +++L EPS64790.1 11 SHREAERRRRKRINGHIATLRSILPDV-----TKTDKASLLGEAVRRVREL 56 7***********************8.....8**********998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.307	7	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-13	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-13	11	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	11	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-12	13	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.15E-5	97	161	No hit	No description
SuperFamily	SSF55021	1.65E-5	97	162	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.6E-6	97	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
AEEEARATND SHREAERRRR KRINGHIATL RSILPDVTKT DKASLLGEAV RRVRELNKAA 60 EELRPSDDAD AFLLPGETDE VKVVEEKNSG RLVMKATLCC QDRPEILTEL RRALKSVEAR 120 VVRAEMSTVG GRTKSVLWVE LNADEERESE DAGMSRLRRA LKGIME

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605433.1	2e-54	PREDICTED: transcription factor bHLH30-like
Refseq	XP_009773084.1	3e-54	PREDICTED: transcription factor bHLH30-like isoform X2
Refseq	XP_016469430.1	3e-54	PREDICTED: transcription factor bHLH30-like
Refseq	XP_016492181.1	3e-54	PREDICTED: transcription factor bHLH30-like
TrEMBL	S8CD13	1e-112	S8CD13_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009605433.1	9e-54	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7283	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	1e-34	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]