PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64897.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 225aa    MW: 24173.8 Da    PI: 5.2957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64897.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-182878155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  EPS64897.1 28 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALSIKG 78
                68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-132878IPR001471AP2/ERF domain
SMARTSM003804.2E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103223.4462986IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-322987IPR001471AP2/ERF domain
CDDcd000182.03E-313086No hitNo description
PRINTSPR003671.7E-103041IPR001471AP2/ERF domain
PRINTSPR003671.7E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVEPPCSTAG AAGENRKKRA KDCGTKHPVY RGVRMRSWGK WVSEIRQPRK KSRIWLGTYP  60
TAEMAARAHD VAALSIKGNS AVLNFPQLSD SLPRPLSLSP RDIQEAAAKA AAMEDLGPGS  120
SSSSSLFSSI SPSSPHCSSS TANSAEDSDH ELVDLIALPS LEGKYDDSTG SGNDLAMVVD  180
TVEAWVQSPF WAFHQDLSEY FSDQVYGGAG SSITTCNFDT PNWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-192087573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856206.11e-71PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor TINY
SwissprotQ9LYD37e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLS8DY801e-165S8DY80_9LAMI; Uncharacterized protein
STRINGXP_006465666.11e-60(Citrus sinensis)
STRINGXP_006495405.11e-60(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]