PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64902.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NAC

Protein Properties

Length: 169aa MW: 19526 Da PI: 8.851

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64902.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.2	6.3e-40	22	152	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 G+rF+P+deel+ +yL +kv+g +l++ + i+ vd+y+++P +L + k +++ewyfF++rd+ky++g+r++r+t +gyWkatg +++++++ + EPS64902.1 22 SGYRFKPKDEELILDYLMRKVHGLTLPM-DDIHYVDLYSCDPDNLTaNFPKVGDDEWYFFTPRDRKYHNGSRPSRSTPTGYWKATGVAVDIFNTRDLDi 119 69************************.67**********9445556999**********************************743335 PP NAM 100 ...vglkktLvfykg.rapkgektdWvmheyrl 128 +g k+tLv+y g + k kt+W+m+ey+l EPS64902.1 120 vnpIGKKRTLVYYVGaPNDKNAKTSWTMQEYTL 152 566******874556678*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.104	20	169	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-41	22	157	IPR003441	NAC domain
Pfam	PF02365	4.7E-22	23	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSELEGSSGK EFKGRKRIDS ISGYRFKPKD EELILDYLMR KVHGLTLPMD DIHYVDLYSC 60 DPDNLTANFP KVGDDEWYFF TPRDRKYHNG SRPSRSTPTG YWKATGVAVD IFNTRDLDIV 120 NPIGKKRTLV YYVGAPNDKN AKTSWTMQEY TLIGERRTRL GPNDMRAES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	23	157	20	147	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	23	157	20	147	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	23	157	20	147	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	23	157	20	147	NO APICAL MERISTEM PROTEIN
3swm_A	3e-31	23	157	23	150	NAC domain-containing protein 19
3swm_B	3e-31	23	157	23	150	NAC domain-containing protein 19
3swm_C	3e-31	23	157	23	150	NAC domain-containing protein 19
3swm_D	3e-31	23	157	23	150	NAC domain-containing protein 19
3swp_A	3e-31	23	157	23	150	NAC domain-containing protein 19
3swp_B	3e-31	23	157	23	150	NAC domain-containing protein 19
3swp_C	3e-31	23	157	23	150	NAC domain-containing protein 19
3swp_D	3e-31	23	157	23	150	NAC domain-containing protein 19
4dul_A	2e-31	23	157	20	147	NAC domain-containing protein 19
4dul_B	2e-31	23	157	20	147	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019105408.1	8e-38	PREDICTED: NAC domain-containing protein 19-like
Swissprot	Q84TD6	6e-33	NAC47_ARATH; NAC transcription factor 47
TrEMBL	S8DY83	1e-122	S8DY83_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	2e-35	NAC domain containing protein 47

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]