PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS64920.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HB-other

Protein Properties

Length: 276aa MW: 31510.4 Da PI: 8.3864

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64920.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.7	1.4e-06	14	74	7	55
--HHHHHHHHHHHHHSSS..--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknry..psaeereeLAkkl..........gLterqVkvWFqNrRake 55 f+++++ e+e++ + ++y ps+e LA + ++t +q+ +WFqNrR+ EPS64920.1 14 FNASEVGEMEAVLQGHHYsvPSREILDALALRFsssaersgkvEVTWKQIWNWFQNRRYAL 74 7788888888888887766689999999999889999999988***************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.95E-9	4	82	IPR009057	Homeodomain-like
SMART	SM00389	0.0095	7	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	8.552	13	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.6E-7	13	82	IPR009057	Homeodomain-like
Pfam	PF16719	3.2E-40	136	262	IPR032001	SAWADEE domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGRPPSNGGP TFRFNASEVG EMEAVLQGHH YSVPSREILD ALALRFSSSA ERSGKVEVTW 60 KQIWNWFQNR RYALRARAAR QSAPVQPNMP AMPQHDQSVL RNVAQAPHPQ AFHPKEAQPS 120 ATTQSVGSNA PKNSLLEFEA KSARDGAWYD VAYFLSHRAI ESGDPEALVR FSGFGPEEDE 180 WVNIRRHVRL RSLPCESSEC AAVLPTDLIL CFQEGKEQAL YFDAHVLDAQ RRRHDKRGCR 240 CRFLVRYDHD QSEEIVPLRK ICRRPETDYR LHQLHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	2e-46	136	266	4	134	SHH1 SAWADEE
4iur_B	2e-46	136	266	4	134	SHH1 SAWADEE
4iut_A	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	2e-46	136	266	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847944.1	1e-150	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
Refseq	XP_020554519.1	1e-149	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
Swissprot	Q8RWJ7	1e-127	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	S8CDK4	0.0	S8CDK4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M00766.1.p	1e-149	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8803	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-108	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]