PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64994.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 253aa    MW: 29090.2 Da    PI: 4.489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64994.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1950103356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  EPS64994.1  50 KKRRLSVEQVKALEKNFEVENKLEPERKMKLAQELGLQPRQVAVWFQNRRARWK 103
                 56689************************************************9 PP
2HD-ZIP_I/II130.18.6e-4249141193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk + e+L++e+e+L +e++e
   EPS64994.1  49 EKKRRLSVEQVKALEKNFEVENKLEPERKMKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFEKLQNENEALVREIEE 141
                  69*************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.51E-1941107IPR009057Homeodomain-like
PROSITE profilePS5007117.63745105IPR001356Homeobox domain
SMARTSM003899.3E-1848109IPR001356Homeobox domain
PfamPF000462.0E-1650103IPR001356Homeobox domain
CDDcd000865.08E-1750106No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2052112IPR009057Homeodomain-like
PRINTSPR000316.2E-67685IPR000047Helix-turn-helix motif
PROSITE patternPS00027080103IPR017970Homeobox, conserved site
PRINTSPR000316.2E-685101IPR000047Helix-turn-helix motif
PfamPF021835.3E-16105145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKRRGSSESL GALISICPSP TDEQKKYLET MLGEEEGCVE ESSGGHVSEK KRRLSVEQVK  60
ALEKNFEVEN KLEPERKMKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD YGVLKANYDA  120
LKLNFEKLQN ENEALVREIE ELKKEEEEEE EEKGIETAPT CDSETETKLK INNGNVEFLG  180
GISDSDSSAI LNEEINNNNN NNSNGAVVYH HHCYQPHFVK LEEQNFLGEE SCSTLFCDDQ  240
PPTLQWYSSD DWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097532.12e-93homeobox-leucine zipper protein ATHB-6
SwissprotQ940J11e-65ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLS8CDG50.0S8CDG5_9LAMI; Uncharacterized protein
STRINGMigut.L00161.1.p3e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-52homeobox protein 16
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]