PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65020.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family LBD
Protein Properties Length: 111aa    MW: 13046.1 Da    PI: 9.8451
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65020.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.58.4e-426105199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCaaCk++rrkC+++C+lapyfpa++p+ f+nvh+lFG+snv+k+l++l++++ r+dam+s++yeA++r r Pv+G+ +vi++l++qle l++el  + 
  EPS65020.1   6 ACAACKYQRRKCTPNCPLAPYFPASEPRMFQNVHRLFGVSNVTKILRQLRNKDhRDDAMKSIIYEADMRRRFPVHGCSAVIHQLRWQLEYLANELRFVC 104
                 7************************************************66555****************************************98776 PP

      DUF260  99 e 99 
                 +
  EPS65020.1 105 S 105
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.0015107IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-406102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
GSNNLACAAC KYQRRKCTPN CPLAPYFPAS EPRMFQNVHR LFGVSNVTKI LRQLRNKDHR  60
DDAMKSIIYE ADMRRRFPVH GCSAVIHQLR WQLEYLANEL RFVCSQLESY R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-29710712119LOB family transfactor Ramosa2.1
5ly0_B3e-29710712119LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843049.14e-52LOB domain-containing protein 27-like
SwissprotQ9STS68e-38LBD27_ARATH; LOB domain-containing protein 27
TrEMBLS8CDT22e-78S8CDT2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.K01343.1.p3e-44(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-40LOB domain-containing protein 27
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  3. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]