PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65146.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 178aa MW: 19795 Da PI: 9.1724

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65146.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H EPS65146.1 39 FSCNYCRRKFYSSQALGGHQNAH 61 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.08E-6	36	66	No hit	No description
PROSITE profile	PS50157	11.385	39	66	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
VKLDLTLSLT DPQQRAGEDD ADAAAGLHRH PPPRSSRVFS CNYCRRKFYS SQALGGHQNA 60 HKRERSLAKR AIQIGMFSDR YTSLASLPLY GGAPPYRSLG IESHASMHHR QEQQQQQQQV 120 FQTPDNRPSA VMHWIRGGGQ PKFPDGGGGH IAVAQPYVEC DESSEVTWWP GSFRQVSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027769818.1	2e-48	zinc finger protein 4-like
TrEMBL	S8CKC5	1e-130	S8CKC5_9LAMI; Uncharacterized protein (Fragment)
STRING	PGSC0003DMT400058615	1e-47	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-26	zinc finger protein 4

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]