PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65185.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YB

Protein Properties

Length: 131aa MW: 14697.7 Da PI: 10.1332

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65185.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	37.5	5.8e-12	9	105	5	96
NF-YB 5 drflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + lP + v r++k+ l + ++ is +d+ e + fi ++++ a d c+ +r+ in++d++ al ++ f +++ pl++ l+ +r ++ EPS65185.1 9 TEALPKTVVRRLVKEKLSQlsrDSEISvlRDSLLAFSESARVFIHYLSATAHDICKDSRRQIINAEDVFKALEDIDFPEFIGPLRTALEDFRRKNTS 105 5679999999999998765111455553368888899*******************************************************87765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-27	8	123	IPR009072	Histone-fold
SuperFamily	SSF47113	8.38E-22	11	116	IPR009072	Histone-fold
Pfam	PF00808	3.4E-7	12	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
DSEKSVAETE ALPKTVVRRL VKEKLSQLSR DSEISVLRDS LLAFSESARV FIHYLSATAH 60 DICKDSRRQI INAEDVFKAL EDIDFPEFIG PLRTALEDFR RKNTSKKKGA TASSSKAKES 120 ASKRRKVSPS E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	125	KKKGATASSSKAKESASKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088898.1	4e-55	DNA polymerase epsilon subunit 3
TrEMBL	S8CEA6	1e-86	S8CEA6_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.D02442.1.p	1e-53	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	8e-38	nuclear factor Y, subunit B11

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]