PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65274.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 244aa    MW: 26675.5 Da    PI: 6.1657
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65274.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP921.3e-2837107368
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....sss 68 
                 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k++i +l+ +     s++
  EPS65274.1  37 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGVSQPSKVVDWLLDATKEEIEKLPPLpmfptSFP 107
                 78***********************************************************9954444222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-263898IPR005333Transcription factor, TCP
PROSITE profilePS5136929.4713896IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNTRTEEGGS EQIQTTSSWS SSSYKNPRIV RVSRNFGGKD RHSKVCTVRG LRDRRIRLSV  60
PTAIQLYDLQ DRLGVSQPSK VVDWLLDATK EEIEKLPPLP MFPTSFPPEL NGGNPMNTHG  120
NNEGGGGGGV VNFYNFQIQN PYLHWDIHNL NFPHHISTGA GAGAGGGEFQ LHDHHNTNNP  180
QLYLCTSSTP ITTHLVPSSL LAAEGGDSMR QMLLQNVDSR PLLNLGNGDE CSEETSQGDG  240
DSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-194397155Putative transcription factor PCF6
5zkt_B4e-194397155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8CE850.0S8CE85_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]