PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65296.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 204aa MW: 24185.8 Da PI: 8.7785

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65296.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	59	82	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF ++L++H + H EPS65296.1 59 WRCGYCKKSFVKEEYLEQHFDNrH 82 58*****************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.891	59	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
EVHCSRERSR AAWRIIDTYL HPFLHRAKYQ LPTHCRLHPS NDIFREQEEH KIHFDINEWR 60 CGYCKKSFVK EEYLEQHFDN RHYNLLNVSH GKCLADLCGA LHCDYVLNSQ SRKTKCNPLA 120 ASRNLHLCEE IADNCFPLST RSPVATHLHE FFLRQFCDAH NCSRKRKYFP RGGQKGSNIL 180 YVATSIMILI LLPVFYTLVY LYKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084024.1	1e-112	uncharacterized protein LOC105166382 isoform X1
TrEMBL	S8CKS6	1e-151	S8CKS6_9LAMI; Uncharacterized protein (Fragment)
STRING	cassava4.1_015196m	1e-105	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8084	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	7e-92	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]