PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65346.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 155aa    MW: 17780 Da    PI: 7.9179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65346.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-0983104426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++f++ G Ck+Gd C +aHg
  EPS65346.1  83 SACPDFRK-GACKRGDACEYAHG 104
                 67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-578108IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-579105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.25380106IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-783104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-683106IPR000571Zinc finger, CCCH-type
SMARTSM0035622114137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
HYEPALVALQ RFLPSNSDDV VVEEGEDFDV PVDAFSCDNF RMFEFKVKKC ALARSHDWTA  60
CPFAHPGEKA RRRDPRKYHY SGSACPDFRK GACKRGDACE YAHGVFECWL HPARYRTQPC  120
KDGTHCRRRV CFFAHTQEQL RVLPYSSSSS AVSPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081722.15e-95zinc finger CCCH domain-containing protein 23
SwissprotO821998e-74C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLS8CKY71e-111S8CKY7_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009784195.12e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-71C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  4. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]