PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65407.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 194aa    MW: 21349 Da    PI: 11.4113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65407.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.2e-20101151155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdp+    r  r +lg+++taeeAa  +++a+  l+g
  EPS65407.1 101 KKFRGVRRRP-WGKWAAEIRDPR----RrVRLWLGTYDTAEEAAMVYDHAAITLRG 151
                 59********.**********83....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.723102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-30102160IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-22102160IPR016177DNA-binding domain
PfamPF008473.7E-13102151IPR001471AP2/ERF domain
SMARTSM003801.1E-35102165IPR001471AP2/ERF domain
CDDcd000182.82E-27103158No hitNo description
PRINTSPR003672.0E-10103114IPR001471AP2/ERF domain
PRINTSPR003672.0E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
VKFSEHVTST TVVAAPPGFR LSDRRNCLYG GGGAGDRTVR ISVTDADATD SSSGEEGACG  60
VCSGRRGRRR RVRRFVNEVR IRDTDGGIVR KKGTAAGGGG KKFRGVRRRP WGKWAAEIRD  120
PRRRVRLWLG TYDTAEEAAM VYDHAAITLR GPHALTNFSN NHHPRPPPHP EEELKKSFPG  180
QHSDAVKSPK SVLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-201021631476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572RGRRRRVR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834244.14e-55PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUE33e-41CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLS8DZG41e-138S8DZG4_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.E01228.1.p2e-54(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-26cytokinin response factor 2
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]