PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65413.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NAC

Protein Properties

Length: 350aa MW: 40206.8 Da PI: 5.1628

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65413.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183	7.5e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s + EPS65413.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRKVNS-QM 102 79**************************.99***********6434555777**********************************.89 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+y+grap+g +tdWvmheyrl EPS65413.1 103 REVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-63	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	61.475	6	158	IPR003441	NAC domain
Pfam	PF02365	1.7E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATRAGYWK ATGKDRKVNS QMREVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECET ASSSGLQDAY ALCRVFKKSL NPPSKAEDRS VVASTSHCDG 180 IFDDVDLGQY LSEEEFSINN MYKTSSSLPF QQSQVDIAVE CARLQNRYSI PPLEIQVQDF 240 SQMAYADPMM FNSGVFPENG NHETNIVQEI LSVAQASQDF QNQGAFGGVY TPAVDDDFSF 300 FMHSNHSDGN YNVEVGQNHH HNINMEVDNE DGRFPESLRW VRICDYELEK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATRAGYWK ATGKDRKVNS QMREVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECET ASSSGLQDAY ALCRVFKKSL NPPSKAEDRS VVASTSHCDG  180
IFDDVDLGQY LSEEEFSINN MYKTSSSLPF QQSQVDIAVE CARLQNRYSI PPLEIQVQDF  240
SQMAYADPMM FNSGVFPENG NHETNIVQEI LSVAQASQDF QNQGAFGGVY TPAVDDDFSF  300
FMHSNHSDGN YNVEVGQNHH HNINMEVDNE DGRFPESLRW VRICDYELEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	1	158	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	1	158	15	168	NAC domain-containing protein 19
3swm_B	2e-57	1	158	15	168	NAC domain-containing protein 19
3swm_C	2e-57	1	158	15	168	NAC domain-containing protein 19
3swm_D	2e-57	1	158	15	168	NAC domain-containing protein 19
3swp_A	2e-57	1	158	15	168	NAC domain-containing protein 19
3swp_B	2e-57	1	158	15	168	NAC domain-containing protein 19
3swp_C	2e-57	1	158	15	168	NAC domain-containing protein 19
3swp_D	2e-57	1	158	15	168	NAC domain-containing protein 19
4dul_A	2e-57	1	158	12	165	NAC domain-containing protein 19
4dul_B	2e-57	1	158	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096933.1	1e-160	NAC domain-containing protein 45
Swissprot	A4VCM0	1e-102	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	S8DQT8	0.0	S8DQT8_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009765145.1	1e-138	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-115	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]