PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65497.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 285aa MW: 32471.8 Da PI: 9.0233

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65497.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F r nL+ H r H EPS65497.1 48 FICEICGKGFQRDQNLQLHRRGH 70 89*******************88 PP
2	zf-C2H2	12.7	0.00038	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ EPS65497.1 124 WKCDKCTKIYAVQSDWKAHSKTC 146 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	47	70	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.92E-7	47	70	No hit	No description
SMART	SM00355	0.016	48	70	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.51	48	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	50	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	89	119	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-4	112	145	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.92E-7	119	144	No hit	No description
SMART	SM00355	220	124	144	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MPENPLQPDE EKTTATTKKK KRNLPGNPDP DAEVVVLSPK TLMTTNRFIC EICGKGFQRD 60 QNLQLHRRGH NLPWKLKQKS SRDRRKKAYV CPEPTCPHHH PSRALGDLTG IKKHYCRKHG 120 EKKWKCDKCT KIYAVQSDWK AHSKTCGTRE YRCDCGTLFS RKDRFMSHRA FCDALAEESA 180 KLYATTSSIL AVHHHHHHHH PHDDFPIPNG FCYGGIPSEQ YLRIPGMSSD EMMASAAAVG 240 PIGGSEVDGF LTRDFLGLAG RIRRSNHYNY EELEEWGGNS NTSFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	120	182	3	65	Zinc finger protein JACKDAW
5b3h_F	1e-32	120	182	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	86	KLKQKSSRDRRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010038657.1	1e-110	PREDICTED: protein indeterminate-domain 12
Refseq	XP_011026098.1	1e-110	PREDICTED: zinc finger protein NUTCRACKER-like
Refseq	XP_011082586.1	1e-110	protein indeterminate-domain 12
Swissprot	O22759	1e-105	IDD12_ARATH; Protein indeterminate-domain 12
Swissprot	Q9ZWA6	1e-105	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	S8DZN6	0.0	S8DZN6_9LAMI; Uncharacterized protein
STRING	XP_010038657.1	1e-110	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-105	indeterminate(ID)-domain 12

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]