PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65849.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 216aa    MW: 24926.2 Da    PI: 6.2997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65849.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.34.3e-5531291129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL  kv++ ++++  +i+e+d++kvePwdLp k++ +ekewyfF  +d+ky+tg r+nrat+sgyWkatgkdke+l+ +++l
  EPS65849.1   3 LPPGFRFHPTDEELITHYLLVKVSSLPTPM-PIITEIDLNKVEPWDLPGKARIGEKEWYFFYMKDRKYPTGLRTNRATESGYWKATGKDKEILR-GKSL 99 
                 79*************************999.88***************99999****************************************9.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfykgrap+gekt W+mheyrle
  EPS65849.1 100 VGMKKTLVFYKGRAPRGEKTCWIMHEYRLE 129
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-632148IPR003441NAC domain
PROSITE profilePS5100559.8193148IPR003441NAC domain
PfamPF023652.7E-284128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDLPPGFRFH PTDEELITHY LLVKVSSLPT PMPIITEIDL NKVEPWDLPG KARIGEKEWY  60
FFYMKDRKYP TGLRTNRATE SGYWKATGKD KEILRGKSLV GMKKTLVFYK GRAPRGEKTC  120
WIMHEYRLEG RNGPRRGDEW VICRIFNKKS GGADENPAGG GSGSCSEARN WRFPSVMEEE  180
EAQETTTLFG YLQNEDVGFE NYDEVLVTSS ESLWYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-57115013170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209288.16e-78NAC domain-containing protein 100
RefseqXP_016563252.12e-78PREDICTED: NAC domain-containing protein 100
RefseqXP_026423504.19e-78NAC domain-containing protein 100-like
SwissprotQ9FLR33e-78NAC79_ARATH; NAC domain-containing protein 79
TrEMBLS8CG301e-159S8CG30_9LAMI; Uncharacterized protein
STRINGEMJ104872e-77(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.29e-81NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  5. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]