PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65872.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 65aa MW: 7588.05 Da PI: 10.9435

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65872.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.9	6.3e-30	15	64	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prl+W+++LH++Fv+ave+LGG+e+AtPk +lelm+vkgLt++h+kSHLQ EPS65872.1 15 PRLKWSKDLHRCFVKAVERLGGEERATPKMVLELMNVKGLTITHIKSHLQ 64 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-27	11	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.292	11	65	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-14	13	64	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	15	65	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	16	64	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
NRGYCIRPYV RSKVPRLKWS KDLHRCFVKA VERLGGEERA TPKMVLELMN VKGLTITHIK 60 SHLQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233787.1	1e-31	myb family transcription factor EFM-like isoform X1
Refseq	XP_022847598.1	1e-32	putative Myb family transcription factor At1g14600
Swissprot	Q700D9	6e-25	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	S8E0V6	1e-40	S8E0V6_9LAMI; Uncharacterized protein (Fragment)
STRING	Solyc02g080860.1.1	5e-31	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-31	G2-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]