PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65907.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 198aa    MW: 22203.1 Da    PI: 9.4136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65907.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064117139123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+++F+++  L  H  +H
  EPS65907.1 117 FVCSSCKRVFNSHQALGGHRASH 139
                 89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.7E-83963IPR007087Zinc finger, C2H2
SMARTSM003550.113961IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.3E-54061No hitNo description
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SuperFamilySSF576672.3E-5112139No hitNo description
PfamPF139121.9E-9117140IPR007087Zinc finger, C2H2
SMARTSM003550.39117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576676.97E-5169195No hitNo description
PfamPF139128.3E-9170194IPR007087Zinc finger, C2H2
PROSITE profilePS501578.683170197IPR007087Zinc finger, C2H2
SMARTSM003550.59170192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
QQTPRRKRRR KTSEFSVEPA GVSRPAARRP DPHAPNITTP CPECYRTFWS WKALFGHMRC  60
HPKRQYRGIN PPENFHRRQG KAPAEEEEFK AEDYEVASYL LMLANGPPMD GPHVGRFVCS  120
SCKRVFNSHQ ALGGHRASHK NVKGCYAITK NDDDDGAAAC CSPSSSTTGH KCVICQRIFT  180
SGQALGGHLR CHWEKAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410RRKRRRK
259RKRRR
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597140.11e-66PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-63ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLS8E0Y31e-147S8E0Y3_9LAMI; Zinc finger family protein (Fragment)
STRINGBo7g117320.15e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA638556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-52C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]