PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65994.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LSD

Protein Properties

Length: 255aa MW: 27649.6 Da PI: 4.1842

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65994.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.8	1.5e-12	203	227	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V+C++C+ V EPS65994.1 203 CGGCSILLMYPDGAPAVQCSSCQLV 227 ***********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.6E-6	162	192	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.9E-11	200	230	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-10	203	227	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGHEAKEDEE MATSTSFEED EDDGPPPGFY PISTPPPSRE ADVQHHGHEV SDEDEEGPPP 60 GFESIGPKPA SESAEGLDVE DEDDDLDGPP PGWDLKNPFS QTPPGLEIKL RIAAAAAEDD 120 DDDKVIPSET EDVLTTPMRS PSIPTPLREE KHGGTPPPER GQLVCGTCQK LCLYPMGTKW 180 VQCPSCKEVN FVLEASEIGQ VVCGGCSILL MYPDGAPAVQ CSSCQLVTQV GEHNKRPPLS 240 VQQAKLRYHR SKRAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8CGD1	0.0	S8CGD1_9LAMI; Uncharacterized protein
STRING	Migut.H01490.1.p	3e-39	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-33	lsd one like 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]