PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66017.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 232aa    MW: 26511.3 Da    PI: 9.9271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66017.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.3e-143586155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +r++h ++Er+RR+++N+ ++ Lr+l+P+    + ++ + a+i+  A+e++k+L+
  EPS66017.1 35 QRMTHIAVERNRRKQMNEHLAVLRSLMPET---YVQRGDQASIVGGAIEFVKELE 86
                79***************************9...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-133388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-123390No hitNo description
SuperFamilySSF474591.31E-1633101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.0723485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-113586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-104091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
GKRPPDRPES SSAPPRKKRR RRQKVCKNKE EAETQRMTHI AVERNRRKQM NEHLAVLRSL  60
MPETYVQRGD QASIVGGAIE FVKELEHILQ SLEAKKFSLM ENNRDEIAEQ DPTIPYSSGT  120
PFSQFFLYPQ FSQLGHKYTS QSKAAVADIE VTLIETHANI RILSRRRLRQ LSKLVVSFHS  180
LYLSILHLNV TTLHSLALYS ISAKVEEGCR LNSADDLAGA VHHMLRIIED EA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521RKKRRRR
21621KKRRRR
33546RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572936.11e-113PREDICTED: transcription factor bHLH71-like
SwissprotQ9SK916e-75BH094_ARATH; Transcription factor bHLH94
TrEMBLS8E1571e-171S8E157_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000452101e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-69bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]