PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66061.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 107aa    MW: 12007.6 Da    PI: 9.5323
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66061.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-081254444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W++   +++ +a +++ ++   +W+ Ia+ +g g++ +++  ++
       EPS66061.1 12 WSAKQNKQFEEALAEYDKDtpdRWHNIAKIVG-GKSVEEVMKHY 54
                     ********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.54762IPR017884SANT domain
SMARTSM007179.0E-8860IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-121065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-41260IPR009057Homeodomain-like
CDDcd001671.59E-71257No hitNo description
PfamPF002493.4E-61254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MASSSVSSSR GWSAKQNKQF EEALAEYDKD TPDRWHNIAK IVGGKSVEEV MKHYEALERD  60
IMKIEAGQVP IPNYPPINFA AKPSPPPQSR GVADVNLNRF VKNLRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-26374273RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.12e-38protein RADIALIS-like 3
SwissprotQ1A1734e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLS8CMP12e-73S8CMP1_9LAMI; Uncharacterized protein
STRINGMigut.N00487.1.p3e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-31RAD-like 6
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]