PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66217.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 178aa    MW: 18440.9 Da    PI: 8.2623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66217.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-0584106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C++ F +   L  H+r+H
  EPS66217.1  84 FSCSVCSRAFGSMKALFGHMRSH 106
                 89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-582108No hitNo description
SMARTSM003550.001884106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.49284106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-484106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-884108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRGGSSSSG SGSSNPNPTR ESPPTTSTQH LTLTIAPPYD RRQAPPGLGI FWGSAGSAAG  60
RRTAQGGSSS SSNNNNNNNS SSEFSCSVCS RAFGSMKALF GHMRSHPDRG WKGARPPPAF  120
VADVEFADLR ALQAANAAAE REAAGIGSSS SSSAVAAHRR RDLPDLNRTP PPEEDDDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022869396.16e-21uncharacterized protein LOC111388817
TrEMBLS8E1M61e-123S8E1M6_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.13e-11C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]