PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66266.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 132aa MW: 15339.6 Da PI: 10.0626

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66266.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.2e-18	16	70	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k EPS66266.1 16 RKKLRLSKDQSAFLEDSFKQHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 70 788899***********************************************98 PP
2	HD-ZIP_I/II	130.1	9e-42	16	105	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+++++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l EPS66266.1 16 RKKLRLSKDQSAFLEDSFKQHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLKKELQELR-AL 105 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.455	12	72	IPR001356	Homeobox domain
SMART	SM00389	5.5E-15	14	76	IPR001356	Homeobox domain
CDD	cd00086	1.65E-13	16	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.6E-18	16	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-18	16	81	IPR009057	Homeodomain-like
Pfam	PF00046	8.4E-16	16	70	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	47	70	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.0E-11	72	106	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.0E-25	72	115	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
PQAKSGDEED NAGLARKKLR LSKDQSAFLE DSFKQHNTLN PKQKLALAKQ LNLRPRQVEV 60 WFQNRRARTK LKQTEVDCEY LKRCCETLTD ENRRLKKELQ ELRALKASQP FYMQLPATTL 120 TMCPSCERVA TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	72	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075258.1	4e-78	homeobox-leucine zipper protein HOX11
Swissprot	P46665	5e-76	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	S8CNA4	4e-91	S8CNA4_9LAMI; Uncharacterized protein (Fragment)
STRING	Gorai.006G143600.1	2e-77	(Gossypium raimondii)
STRING	cassava4.1_010584m	3e-77	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-65	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]