PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66320.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 149aa MW: 16708.8 Da PI: 9.5285

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66320.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.1	1.4e-36	5	62	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg+ r+ k+ EPS66320.1 5 SKLSCPRCDSINTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGANRRGAKR 62 6789***********************************************9997765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-32	6	60	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-25	6	61	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.211	7	61	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	9	45	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
APLASKLSCP RCDSINTKFC YYNNYNFSQP RHFCKSCRRY WTHGGTLRDI PVGGANRRGA 60 KRSRAAVESD ASVFFPFFQH HDFRRDWEER SFTFPIGGEG RIPVEFSGEG KLLLPPPPHH 120 GGEGIRGLGG VGYTDVAFGI GRNVWPLYG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101840.1	3e-43	PREDICTED: dof zinc finger protein DOF3.4-like
Refseq	XP_013646932.1	3e-43	dof zinc finger protein DOF3.4
TrEMBL	S8CHJ2	1e-106	S8CHJ2_9LAMI; Uncharacterized protein (Fragment)
STRING	Bra030010.1-P	1e-42	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	7e-36	Dof family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]