PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66396.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HSF
Protein Properties Length: 217aa    MW: 25596.2 Da    PI: 9.8909
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66396.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.2e-36261182103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + +f+++vLpkyFkh+nf+SFvRQLn+YgF+k+  e+         weF+++ F++g+k+ll++i+
    EPS66396.1  26 FLTKTYQLVDDPATDHIVSWGERHSTFVVWRPPDFSRDVLPKYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANEFFRRGEKHLLSEIH 113
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
    EPS66396.1 114 RRKSA 118
                   **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3818109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.07E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAVLLENLDG LLLSLESPQK SLPAPFLTKT YQLVDDPATD HIVSWGERHS TFVVWRPPDF  60
SRDVLPKYFK HNNFSSFVRQ LNTYGFRKIV PERWEFANEF FRRGEKHLLS EIHRRKSAPP  120
PPLPQDLVGN HHHRGFFEEG IEKWSPPPPP PPPHVHRRRS RTLTELAEDN ERLRRSNDIL  180
MTELTQMKRL YNDIMYFVQN HVKPLSPSHS FNPFSFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-232111816123Heat shock factor protein 1
5d5u_B1e-232111525129Heat shock factor protein 1
5d5v_B1e-232111525129Heat shock factor protein 1
5d5v_D1e-232111525129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072299.11e-97heat stress transcription factor B-4
SwissprotQ9C6352e-85HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLS8CNQ21e-156S8CNQ2_9LAMI; Heat shock transcription factor (Fragment)
STRINGAES733099e-93(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-83heat shock transcription factor B4
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]