PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66403.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 244aa    MW: 27347.3 Da    PI: 5.2618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66403.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-10958154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                r++ +  rE+ RR r+N+ f eL + l ++     +K++Ka+iL  +++ Ik+L
  EPS66403.1  9 RKVQKADREKLRRGRLNEQFMELGKALDPD----RPKNDKASILIDTIQMIKEL 58
                5677889********************997....79****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-14577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-7662No hitNo description
Gene3DG3DSA:4.10.280.105.7E-12679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.976858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-8958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-71464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF123165.4E-5118234IPR024580Dishevelled C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDGETKDSRK VQKADREKLR RGRLNEQFME LGKALDPDRP KNDKASILID TIQMIKELTS  60
QVDKLKSEYA SLTEESRELI HEKNDLREEK ASLKSDVENL NSQYSQRVRS MYPWTGMDQT  120
VLMPLPIPIP SGPVPLQPYP YFGSQNPPPN PYTPYMARDS VVEQLSRYSS SGRDGESGLE  180
KNDDSNDVTT DLELKTPGSN SDQNDNSPLK RRREKRDNDP SSSSGCCSSS SVRSISSITI  240
GGGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208215LKRRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092862.11e-100transcription factor bHLH121
SwissprotQ9LT235e-72BH121_ARATH; Transcription factor bHLH121
TrEMBLS8DTC91e-176S8DTC9_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc01g111130.2.14e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-70bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]