PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66445.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Whirly

Protein Properties

Length: 187aa MW: 20723.4 Da PI: 9.3464

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66445.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	214	1.4e-66	12	149	1	138
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 svyk+kaa++v+++ p+f++l sg++k++++G++ll++a+a++ r+ydW +kq f+ls+te++++++l++++sceffhdp +++s+eG+vrk+lkvePl EPS66445.1 12 SVYKGKAAITVEPRPPEFSSLGSGAFKVSKEGFVLLQFAPAVGSRQYDWTRKQIFSLSVTEIGNIISLGARDSCEFFHDPNKGKSDEGRVRKVLKVEPL 110 79*********************************************************************************************** PP Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 pdGsG+f+nlsv+n++++++es+++P+++aefavl s l EPS66445.1 111 PDGSGHFFNLSVQNKITNVDESIYIPITRAEFAVLVSSL 149 *********************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	3.5E-78	2	173	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	5.73E-74	5	185	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	3.4E-62	13	146	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0032211	Biological Process	negative regulation of telomere maintenance via telomerase
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0045910	Biological Process	negative regulation of DNA recombination
GO:0009508	Cellular Component	plastid chromosome
GO:0009570	Cellular Component	chloroplast stroma
GO:0003697	Molecular Function	single-stranded DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003723	Molecular Function	RNA binding
GO:0042162	Molecular Function	telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
GQLPPRVYAG YSVYKGKAAI TVEPRPPEFS SLGSGAFKVS KEGFVLLQFA PAVGSRQYDW 60 TRKQIFSLSV TEIGNIISLG ARDSCEFFHD PNKGKSDEGR VRKVLKVEPL PDGSGHFFNL 120 SVQNKITNVD ESIYIPITRA EFAVLVSSLN FIVPYLLGWH AFASSVKPED SSSTRSNSRT 180 VDFEWSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1l3a_A	1e-102	1	186	32	219	p24: plant transcriptional regulator PBF-2
1l3a_B	1e-102	1	186	32	219	p24: plant transcriptional regulator PBF-2
1l3a_C	1e-102	1	186	32	219	p24: plant transcriptional regulator PBF-2
1l3a_D	1e-102	1	186	32	219	p24: plant transcriptional regulator PBF-2
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269\|PubMed:10948264, ECO:0000269\|PubMed:12080340, ECO:0000269\|PubMed:14960277}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087065.2	1e-115	single-stranded DNA-binding protein WHY1, chloroplastic
Swissprot	Q9LL85	1e-103	WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBL	S8CIA8	1e-134	S8CIA8_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.L01333.1.p	1e-113	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7731	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-104	ssDNA-binding transcriptional regulator

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]